Biomolecular Databases - Laboratorio (2008/2009)

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Course code
4S00173
Name of lecturer
Alejandro Giorgetti
Number of ECTS credits allocated
2
Academic sector
BIO/10 - BIOCHEMISTRY
Language of instruction
Italian
Location
VERONA
Period
1° Sem dal Oct 1, 2008 al Feb 6, 2009.
Course news Seminars related to the course

To show the organization of the course that includes this module, follow this link * Course organization

Lesson timetable

Learning outcomes

Here we offer the student to get a deep insight of the theoretical basis of the principal bioinformatic tools. In particular, special attention is put on the biomolecular data bases.

Syllabus

Introduction to bioinformatics.

Biomolecular Data bases:

PubMed
Nucleotidic Data Bases: EML, GenBank
Protein Data Bases: PIR, SwissProt, TREMBL
Structural Data Bases: PDB, NDB.
Genomic Projects: ENSEMBL, TIGR
Gene Onthology

Search and Alignments Algoritms
FASTA and BLAST
PSI-BLAST and profile definition
Substitution matrices
Alignment algoritms: Needleman e Wunsch and Smith-Waterman
Multiple sequence alignment programs: CLUSTALW, T-Coffee
ROC curves

Assessment methods and criteria

written

Links

Studying

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