Publications

Authors:

Sato, Shusei; Tabata, Satoshi; Hirakawa, Hideki; Asamizu, Erika; Shirasawa, Kenta; Isobe, Sachiko; Kaneko, Takakazu; Nakamura, Yasukazu; Shibata, Daisuke; Aoki, Koh; Egholm, Michael; Knight, James; Bogden, Robert; Li, Changbao; Shuang, Yang; Xu, Xun; Pan, Shengkai; Cheng, Shifeng; Liu, Xin; Ren, Yuanyuan; Wang, Jun; Albiero, Alessandro; Dal Pero, Francesca; Todesco, Sara; Van Eck, Joyce; Buels, Robert M.; Bombarely, Aureliano; Gosselin, Joseph R.; Huang, Minyun; Leto, Jonathan A.; Menda, Naama; Strickler, Susan; Mao, Linyong; Gao, Shan; Tecle, Isaak Y.; York, Thomas; Zheng, Yi; Vrebalov, Julia T.; Lee, Jemin; Zhong, Silin; Mueller, Lukas A.; Stiekema, Willem J.; Ribeca, Paolo; Alioto, Tyler; Yang, Wencai; Huang, Sanwen; Du, Yongchen; Zhang, Zhonghua; Gao, Jianchang; Guo, Yanmei; Wang, Xiaoxuan; Li, Ying; He, Jun; Li, Chuanyou; Cheng, Zhukuan; Zuo, Jianru; Ren, Jianfeng; Zhao, Jiuhai; Yan, Liuhua; Jiang, Hongling; Wang, Bao; Li, Hongshuang; Li, Zhenjun; Fu, Fuyou; Chen, Bingtang; Han, Bin; Feng, Qi; Fan, Danlin; Wang, Ying; Ling, Hongqing; Xue, Yongbiao; Ware, Doreen; Richard McCombie, W.; Lippman, Zachary B.; Chia, Jer Ming; Jiang, Ke; Pasternak, Shiran; Gelley, Laura; Kramer, Melissa; Anderson, Lorinda K.; Chang, Song Bin; Royer, Suzanne M.; Shearer, Lindsay A.; Stack, Stephen M.; Rose, Jocelyn K. C.; Xu, Yimin; Eannetta, Nancy; Matas, Antonio J.; Mcquinn, Ryan; Tanksley, Steven D.; Camara, Francisco; Guigó, Roderic; Rombauts, Stephane; Fawcett, Jeffrey; Van de Peer, Yves; Zamir, Dani; Liang, Chunbo; Spannagl, Manuel; Gundlach, Heidrun; Bruggmann, Remy; Mayer, Klaus; Jia, Zhiqi; Zhang, Junhong; Ye, Zhibiao; Bishop, Gerard J.; Butcher, Sarah; Lopez Cobollo, Rosa; Buchan, Daniel; Filippis, Ioannis; Abbott, James; Dixit, Rekha; Singh, Manju; Singh, Archana; Kumar Pal, Jitendra; Pandit, Awadhesh; Kumar Singh, Pradeep; Kumar Mahato, Ajay; Dogra, Vivek; Gaikwad, Kishor; Raj Sharma, Tilak; Mohapatra, Trilochan; Kumar Singh, Nagendra; Causse, Mathilde; Rothan, Christophe; Schiex, Thomas; Noirot, Céline; Bellec, Arnaud; Klopp, Christophe; Delalande, Corinne; Berges, Hélène; Mariette, Jérôme; Frasse, Pierre; Vautrin, Sonia; Zouine, Mohamed; Latché, Alain; Rousseau, Christine; Regad, Farid; Pech, Jean Claude; Philippot, Murielle; Bouzayen, Mondher; Pericard, Pierre; Osorio, Sonia; Fernandez del Carmen, Asunción; Monforte, Antonio; Granell, Antonio; Fernandez Muñoz, Rafael; Conte, Mariana; Lichtenstein, Gabriel; Carrari, Fernando; De Bellis, Gianluca; Fuligni, Fabio; Peano, Clelia; Grandillo, Silvana; Termolino, Pasquale; Pietrella, Marco; Fantini, Elio; Falcone, Giulia; Fiore, Alessia; Giuliano, Giovanni; Lopez, Loredana; Facella, Paolo; Perrotta, Gaetano; Daddiego, Loretta; Bryan, Glenn; Orozco, Modesto; Pastor, Xavier; Torrents, David; van Schriek, Marco G. M.; Feron, Richard M. C.; van Oeveren, Jan; de Heer, Peter; Daponte, Lorena; Jacobs Oomen, Saskia; Cariaso, Mike; Prins, Marcel; van Eijk, Michiel J. T.; Janssen, Antoine; van Haaren, Mark J. J.; Jo, Sung Hwan; Kim, Jungeun; Kwon, Suk Yoon; Kim, Sangmi; Koo, Dal Hoe; Lee, Sanghyeob; Hur, Cheol Goo; Clouser, Christopher; Rico, Alain; Hallab, Asis; Gebhardt, Christiane; Klee, Kathrin; Jöcker, Anika; Warfsmann, Jens; Göbel, Ulrike; Kawamura, Shingo; Yano, Kentaro; Sherman, Jamie D.; Fukuoka, Hiroyuki; Negoro, Satomi; Bhutty, Sarita; Chowdhury, Parul; Chattopadhyay, Debasis; Datema, Erwin; Smit, Sandra; Schijlen, Elio G. W. M.; van de Belt, Jose; van Haarst, Jan C.; Peters, Sander A.; van Staveren, Marjo J.; Henkens, Marleen H. C.; Mooyman, Paul J. W.; Hesselink, Thamara; van Ham, Roeland C. H. J.; Jiang, Guoyong; Droege, Marcus; Choi, Doil; Kang, Byung Cheol; Dong Kim, Byung; Park, Minkyu; Kim, Seungill; Yeom, Seon In; Lee, Yong Hwan; Choi, Yang Do; Li, Guangcun; Gao, Jianwei; Liu, Yongsheng; Huang, Shengxiong; Fernandez Pedrosa, Victoria; Collado, Carmen; Zuñiga, Sheila; Wang, Guoping; Cade, Rebecca; Dietrich, Robert A.; Rogers, Jane;

Title:

The tomato genome sequence provides insights into fleshy fruit evolution

Year:

2012

Type of item:

Articolo in Rivista

Tipologia ANVUR:

Articolo su rivista

Language:

Inglese

Referee:

No

Name of journal:

Nature

ISSN of journal:

0028-0836

N° Volume:

485

Number or Folder:

7400

Page numbers:

635-641

Keyword:

Arabidopsis; Genetic Variation; Genome, Plant; Genomics; Lycopersicon esculentum; Molecular Sequence Data; Phylogeny; RNA, Plant; Sequence Analysis, DNA; Solanum tuberosum; Soybeans; Synteny; Evolution, Molecular

Short description of contents:

Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium, and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness.

Product ID:

97872

Handle IRIS:

11562/963855

Last Modified:

November 11, 2022

Bibliographic citation:

Sato, Shusei; Tabata, Satoshi; Hirakawa, Hideki; Asamizu, Erika; Shirasawa, Kenta; Isobe, Sachiko; Kaneko, Takakazu; Nakamura, Yasukazu; Shibata, Daisuke; Aoki, Koh; Egholm, Michael; Knight, James; Bogden, Robert; Li, Changbao; Shuang, Yang; Xu, Xun; Pan, Shengkai; Cheng, Shifeng; Liu, Xin; Ren, Yuanyuan; Wang, Jun; Albiero, Alessandro; Dal Pero, Francesca; Todesco, Sara; Van Eck, Joyce; Buels, Robert M.; Bombarely, Aureliano; Gosselin, Joseph R.; Huang, Minyun; Leto, Jonathan A.; Menda, Naama; Strickler, Susan; Mao, Linyong; Gao, Shan; Tecle, Isaak Y.; York, Thomas; Zheng, Yi; Vrebalov, Julia T.; Lee, Jemin; Zhong, Silin; Mueller, Lukas A.; Stiekema, Willem J.; Ribeca, Paolo; Alioto, Tyler; Yang, Wencai; Huang, Sanwen; Du, Yongchen; Zhang, Zhonghua; Gao, Jianchang; Guo, Yanmei; Wang, Xiaoxuan; Li, Ying; He, Jun; Li, Chuanyou; Cheng, Zhukuan; Zuo, Jianru; Ren, Jianfeng; Zhao, Jiuhai; Yan, Liuhua; Jiang, Hongling; Wang, Bao; Li, Hongshuang; Li, Zhenjun; Fu, Fuyou; Chen, Bingtang; Han, Bin; Feng, Qi; Fan, Danlin; Wang, Ying; Ling, Hongqing; Xue, Yongbiao; Ware, Doreen; Richard McCombie, W.; Lippman, Zachary B.; Chia, Jer Ming; Jiang, Ke; Pasternak, Shiran; Gelley, Laura; Kramer, Melissa; Anderson, Lorinda K.; Chang, Song Bin; Royer, Suzanne M.; Shearer, Lindsay A.; Stack, Stephen M.; Rose, Jocelyn K. C.; Xu, Yimin; Eannetta, Nancy; Matas, Antonio J.; Mcquinn, Ryan; Tanksley, Steven D.; Camara, Francisco; Guigó, Roderic; Rombauts, Stephane; Fawcett, Jeffrey; Van de Peer, Yves; Zamir, Dani; Liang, Chunbo; Spannagl, Manuel; Gundlach, Heidrun; Bruggmann, Remy; Mayer, Klaus; Jia, Zhiqi; Zhang, Junhong; Ye, Zhibiao; Bishop, Gerard J.; Butcher, Sarah; Lopez Cobollo, Rosa; Buchan, Daniel; Filippis, Ioannis; Abbott, James; Dixit, Rekha; Singh, Manju; Singh, Archana; Kumar Pal, Jitendra; Pandit, Awadhesh; Kumar Singh, Pradeep; Kumar Mahato, Ajay; Dogra, Vivek; Gaikwad, Kishor; Raj Sharma, Tilak; Mohapatra, Trilochan; Kumar Singh, Nagendra; Causse, Mathilde; Rothan, Christophe; Schiex, Thomas; Noirot, Céline; Bellec, Arnaud; Klopp, Christophe; Delalande, Corinne; Berges, Hélène; Mariette, Jérôme; Frasse, Pierre; Vautrin, Sonia; Zouine, Mohamed; Latché, Alain; Rousseau, Christine; Regad, Farid; Pech, Jean Claude; Philippot, Murielle; Bouzayen, Mondher; Pericard, Pierre; Osorio, Sonia; Fernandez del Carmen, Asunción; Monforte, Antonio; Granell, Antonio; Fernandez Muñoz, Rafael; Conte, Mariana; Lichtenstein, Gabriel; Carrari, Fernando; De Bellis, Gianluca; Fuligni, Fabio; Peano, Clelia; Grandillo, Silvana; Termolino, Pasquale; Pietrella, Marco; Fantini, Elio; Falcone, Giulia; Fiore, Alessia; Giuliano, Giovanni; Lopez, Loredana; Facella, Paolo; Perrotta, Gaetano; Daddiego, Loretta; Bryan, Glenn; Orozco, Modesto; Pastor, Xavier; Torrents, David; van Schriek, Marco G. M.; Feron, Richard M. C.; van Oeveren, Jan; de Heer, Peter; Daponte, Lorena; Jacobs Oomen, Saskia; Cariaso, Mike; Prins, Marcel; van Eijk, Michiel J. T.; Janssen, Antoine; van Haaren, Mark J. J.; Jo, Sung Hwan; Kim, Jungeun; Kwon, Suk Yoon; Kim, Sangmi; Koo, Dal Hoe; Lee, Sanghyeob; Hur, Cheol Goo; Clouser, Christopher; Rico, Alain; Hallab, Asis; Gebhardt, Christiane; Klee, Kathrin; Jöcker, Anika; Warfsmann, Jens; Göbel, Ulrike; Kawamura, Shingo; Yano, Kentaro; Sherman, Jamie D.; Fukuoka, Hiroyuki; Negoro, Satomi; Bhutty, Sarita; Chowdhury, Parul; Chattopadhyay, Debasis; Datema, Erwin; Smit, Sandra; Schijlen, Elio G. W. M.; van de Belt, Jose; van Haarst, Jan C.; Peters, Sander A.; van Staveren, Marjo J.; Henkens, Marleen H. C.; Mooyman, Paul J. W.; Hesselink, Thamara; van Ham, Roeland C. H. J.; Jiang, Guoyong; Droege, Marcus; Choi, Doil; Kang, Byung Cheol; Dong Kim, Byung; Park, Minkyu; Kim, Seungill; Yeom, Seon In; Lee, Yong Hwan; Choi, Yang Do; Li, Guangcun; Gao, Jianwei; Liu, Yongsheng; Huang, Shengxiong; Fernandez Pedrosa, Victoria; Collado, Carmen; Zuñiga, Sheila; Wang, Guoping; Cade, Rebecca; Dietrich, Robert A.; Rogers, Jane;, The tomato genome sequence provides insights into fleshy fruit evolution «Nature» , vol. 485 , n. 7400 , 2012 , pp. 635-641

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